{
  "_id": "6a21270acd65a98ecbd215c6",
  "Package": "RootscanR",
  "Title": "Stitching and Analyzing Root Scans",
  "Version": "0.0.1",
  "Authors@R": "c(\nperson(\"Sophie\", \"Kersting\", , \"sophie.kersting@uni-greifswald.de\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1038-9246\")),\nperson(\"Linda\", \"Knüver\", , \"\",\nrole = \"aut\"),\nperson(\"Mareike\", \"Fischer\", , \"mareike.fischer@uni-greifswald.de\",\nrole = \"aut\", comment = c(ORCID = \"0000-0002-9429-0859\"))\n)",
  "Author": "Sophie Kersting [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-1038-9246>), Linda Knüver [aut],\nMareike Fischer [aut] (ORCID:\n<https://orcid.org/0000-0002-9429-0859>)",
  "Maintainer": "Sophie Kersting <sophie.kersting@uni-greifswald.de>",
  "Description": "Minirhizotrons are widely used to observe and explore\nroots and their growth. This package provides the means to\nstitch images and divide them into depth layers. Please note\nthat this R package was developed alongside the following\nmanuscript: Stitching root scans and extracting depth layer\ninformation -- a workflow and practical examples, S. Kersting,\nL. Knüver, and M. Fischer. The manuscript is currently in\npreparation and should be citet as soon as it is available.\nThis project was supported by the project ArtIGROW, which is a\npart of the WIR!-Alliance ArtIFARM – Artificial Intelligence in\nFarming funded by the German Federal Ministry of Research,\nTechnology and Space (No. 03WIR4805).",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.3.3",
  "Packaged": {
    "Date": "2026-06-04 07:16:06 UTC",
    "User": "root"
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  "Config/pak/sysreqs": "libicu-dev libpng-dev",
  "Repository": "https://sophiekersting.r-universe.dev",
  "Date/Publication": "2025-10-30 20:36:03 UTC",
  "RemoteUrl": "https://github.com/cran/RootscanR",
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  "_published": "2026-06-04T07:19:38.194Z",
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    "author": "Sophie Kersting <sophie.kersting@uni-greifswald.de>",
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    "applyImgMask",
    "blendImgs",
    "checkInput",
    "cm2px",
    "combineStatsWithDL",
    "createDepthLayerMasks",
    "dissectionLine",
    "findAvgOverlap",
    "findAvgSurface",
    "findOverlap",
    "findSurface",
    "getDepthLayerInfo",
    "getDepthLayerInfo_par",
    "getNeighborCoords",
    "getOverviewInput",
    "imageCorr",
    "kimuraLength",
    "ppcm2ppi",
    "ppi2ppcm",
    "px2cm",
    "showImgMask",
    "skelPxWidth",
    "splitImgHoriz",
    "stitchImgs"
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  "_help": [
    {
      "page": "checkInput",
      "title": "Check if the root scan directories contain everything necessary",
      "topics": [
        "checkInput"
      ]
    },
    {
      "page": "convert_px_cm",
      "title": "Functions for converting pixels and centimeters",
      "topics": [
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        "px2cm"
      ]
    },
    {
      "page": "combineStatsWithDL",
      "title": "Get an overview of the given root scans",
      "topics": [
        "combineStatsWithDL"
      ]
    },
    {
      "page": "createDepthLayerMasks",
      "title": "Create masking layers for the depth layers",
      "topics": [
        "createDepthLayerMasks",
        "dissectionLine"
      ]
    },
    {
      "page": "findAvgOverlap",
      "title": "Find average image overlaps",
      "topics": [
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      ]
    },
    {
      "page": "findAvgSurface",
      "title": "Find the average surface level",
      "topics": [
        "findAvgSurface"
      ]
    },
    {
      "page": "findOverlap",
      "title": "Find image overlaps",
      "topics": [
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        "imageCorr"
      ]
    },
    {
      "page": "findSurface",
      "title": "Find the surface level and split images",
      "topics": [
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        "splitImgHoriz"
      ]
    },
    {
      "page": "getDepthLayerInfo",
      "title": "Extract depth layer information from root scans",
      "topics": [
        "getDepthLayerInfo"
      ]
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      "title": "Extract depth layer information from root scans (parallel)",
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        "getDepthLayerInfo_par"
      ]
    },
    {
      "page": "getNeighborCoords",
      "title": "Get coordinates of neighbors of specified distance",
      "topics": [
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      ]
    },
    {
      "page": "getOverviewInput",
      "title": "Get an overview of the given root scans",
      "topics": [
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      ]
    },
    {
      "page": "kimuraLength",
      "title": "Computation of the Kimura length",
      "topics": [
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      ]
    },
    {
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        "ppi2ppcm"
      ]
    },
    {
      "page": "showImgMask",
      "title": "Depict images with masking layers",
      "topics": [
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        "showImgMask"
      ]
    },
    {
      "page": "skelPxWidth",
      "title": "Count skeleton root pixels with certain widths in the base root image",
      "topics": [
        "skelPxWidth"
      ]
    },
    {
      "page": "stitchImgs",
      "title": "Stitch images",
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        "stitchImgs"
      ]
    }
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