{
  "_id": "6a1f301db401979e734276f6",
  "Package": "poweRbal",
  "Title": "Phylogenetic Tree Models and the Power of Tree Shape Statistics",
  "Version": "0.1.0",
  "Authors@R": "c(\nperson(\"Sophie\", \"Kersting\", , \"sophie.kersting@uni-greifswald.de\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1038-9246\")),\nperson(\"Kristina\", \"Wicke\", , \"\",\nrole = \"aut\", comment = c(ORCID = \"0000-0002-4275-5546\")),\nperson(\"Mareike\", \"Fischer\", , \"email@mareikefischer.de\",\nrole = \"aut\", comment = c(ORCID = \"0000-0002-9429-0859\"))\n)",
  "Maintainer": "Sophie Kersting <sophie.kersting@uni-greifswald.de>",
  "Description": "The first goal of this package is to provide a multitude\nof tree models, i.e., functions that generate rooted binary\ntrees with a given number of leaves. Second, the package allows\nfor an easy evaluation and comparison of tree shape statistics\nby estimating their power to differentiate between different\ntree models. Please note that this R package was developed\nalongside the manuscript 'Tree balance in phylogenetic models'\nby S. J. Kersting, K. Wicke, and M. Fischer (2025)\n<doi:10.1098/rstb.2023.0303>, which provides further background\nand the respective mathematical definitions. This project was\nsupported by the project ArtIGROW, which is a part of the\nWIR!-Alliance ArtIFARM – Artificial Intelligence in Farming\nfunded by the German Federal Ministry of Education and Research\n(No. 03WIR4805).",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.3.3",
  "Packaged": {
    "Date": "2026-05-15 08:56:21 UTC",
    "User": "root"
  },
  "Author": "Sophie Kersting [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-1038-9246>), Kristina Wicke [aut]\n(ORCID: <https://orcid.org/0000-0002-4275-5546>), Mareike\nFischer [aut] (ORCID: <https://orcid.org/0000-0002-9429-0859>)",
  "Config/pak/sysreqs": "libglpk-dev libgmp3-dev libxml2-dev",
  "Repository": "https://sophiekersting.r-universe.dev",
  "Date/Publication": "2026-04-15 09:54:10 UTC",
  "RemoteUrl": "https://github.com/cran/poweRbal",
  "RemoteRef": "HEAD",
  "RemoteSha": "6e844340a0aec3463853b37a90451ffb02609c86",
  "MD5sum": "a04ca49b287aa8ec74394823da34d052",
  "_user": "sophiekersting",
  "_type": "src",
  "_file": "poweRbal_0.1.0.tar.gz",
  "_fileid": "d6b378d87ba9759309f01650ef2a5297fda34bd62146840f4ac5ce9588f8d922",
  "_filesize": 239227,
  "_sha256": "d6b378d87ba9759309f01650ef2a5297fda34bd62146840f4ac5ce9588f8d922",
  "_created": "2026-05-15T08:56:21.000Z",
  "_published": "2026-06-02T19:33:49.545Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79155566217,
      "time": 139,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7013554412"
    },
    {
      "job": 79155566142,
      "time": 149,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013554995"
    },
    {
      "job": 79155566633,
      "time": 243,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7013569581"
    },
    {
      "job": 79155566301,
      "time": 125,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013543211"
    },
    {
      "job": 79155565429,
      "time": 188,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013514569"
    },
    {
      "job": 79155565497,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367873831"
    },
    {
      "job": 79155566240,
      "time": 100,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7013541921"
    },
    {
      "job": 79155566859,
      "time": 80,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7013536381"
    },
    {
      "job": 79155566333,
      "time": 88,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013539171"
    }
  ],
  "_buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/poweRbal",
  "_commit": {
    "id": "6e844340a0aec3463853b37a90451ffb02609c86",
    "author": "Sophie Kersting <sophie.kersting@uni-greifswald.de>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.0\n",
    "time": 1776246850
  },
  "_maintainer": {
    "name": "Sophie Kersting",
    "email": "sophie.kersting@uni-greifswald.de",
    "login": "sophiekersting",
    "uuid": 81629631,
    "orcid": "0000-0002-1038-9246"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "phytools",
      "role": "Imports"
    },
    {
      "package": "treebalance",
      "role": "Imports"
    },
    {
      "package": "R.utils",
      "role": "Imports"
    },
    {
      "package": "memoise",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "diversitree",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-16",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.0",
      "date": "2026-04-15"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sophiekersting",
      "count": 1,
      "uuid": 81629631
    }
  ],
  "_userbio": {
    "uuid": 81629631,
    "type": "user",
    "name": "SophieKersting"
  },
  "_downloads": {
    "count": 486,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/poweRbal"
  },
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/poweRbal.html",
    "manual.pdf"
  ],
  "_realowner": "sophiekersting",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.0.3",
      "date": "2024-06-28"
    },
    {
      "version": "0.0.1.1",
      "date": "2024-08-16"
    },
    {
      "version": "0.1.0",
      "date": "2026-04-15"
    }
  ],
  "_exports": [
    "computeAccRegion",
    "enum2cladewise",
    "genAldousBetaTree",
    "genAltBirthDeathTree",
    "genBiSSETree",
    "genCombTree",
    "genDensityTree",
    "genETMTree",
    "genFordsAlphaTree",
    "genGFBTree",
    "genGrowTree",
    "genMBTree",
    "genPDATree",
    "genTrees",
    "genYuleTree",
    "getAccRegion",
    "getAccRegion_exact",
    "getAccRegion_sampled",
    "getAllTSS",
    "getPowerMultTSS",
    "getTSScolors",
    "getTSSdata",
    "getTSSdata_trees",
    "getTSSnames",
    "getTSSonly_bin",
    "getTSSsafe_n",
    "getTSSsimple",
    "getTSStype",
    "powerComp",
    "powerComp_RegAcc",
    "showTSSdata",
    "tssInfo"
  ],
  "_help": [
    {
      "page": "reenumNodes",
      "title": "Function to modify the node enumeration in rooted binary trees",
      "topics": [
        "enum2cladewise"
      ]
    },
    {
      "page": "tmAldous",
      "title": "Generation of rooted binary trees under Aldous' beta splitting model",
      "topics": [
        "genAldousBetaTree"
      ]
    },
    {
      "page": "tmAltBirthDeath",
      "title": "Generation of rooted binary trees under the alternative birth-death model",
      "topics": [
        "genAltBirthDeathTree"
      ]
    },
    {
      "page": "tmBiSSE",
      "title": "Generation of rooted binary trees under the BiSSE model",
      "topics": [
        "genBiSSETree"
      ]
    },
    {
      "page": "tmComb",
      "title": "Generation of the comb or caterpillar tree",
      "topics": [
        "genCombTree"
      ]
    },
    {
      "page": "tmDensity",
      "title": "Generation of rooted binary trees under the density model",
      "topics": [
        "genDensityTree"
      ]
    },
    {
      "page": "tmETM",
      "title": "Generation of rooted binary trees under the equiprobable-types-model (ETM)",
      "topics": [
        "genETMTree"
      ]
    },
    {
      "page": "tmFord",
      "title": "Generation of rooted binary trees under Ford's alpha model",
      "topics": [
        "genFordsAlphaTree"
      ]
    },
    {
      "page": "tmGFB",
      "title": "Generation of the greedy from the bottom tree",
      "topics": [
        "genGFBTree"
      ]
    },
    {
      "page": "tmGrowNoExtDT",
      "title": "Generation of rooted binary trees under tree growing models (no extinction)",
      "topics": [
        "genGrowTree"
      ]
    },
    {
      "page": "tmMB",
      "title": "Generation of the maximally balanced tree",
      "topics": [
        "genMBTree"
      ]
    },
    {
      "page": "tmPDA",
      "title": "Generation of rooted binary trees under the PDA model",
      "topics": [
        "genPDATree"
      ]
    },
    {
      "page": "generateTrees",
      "title": "Generation of rooted binary trees under a given tree model",
      "topics": [
        "genTrees"
      ]
    },
    {
      "page": "tmYule",
      "title": "Generation of rooted binary trees under the Yule model",
      "topics": [
        "genYuleTree"
      ]
    },
    {
      "page": "powerRegAcc",
      "title": "Functions for computing the region of acceptance",
      "topics": [
        "computeAccRegion",
        "getAccRegion",
        "getAccRegion_exact",
        "getAccRegion_sampled"
      ]
    },
    {
      "page": "powerCompute",
      "title": "Function for computing the power given the region of acceptance",
      "topics": [
        "getPowerMultTSS"
      ]
    },
    {
      "page": "powerData",
      "title": "Functions for generating the TSS data under a tree model",
      "topics": [
        "getTSSdata",
        "getTSSdata_trees"
      ]
    },
    {
      "page": "tssGetInfo",
      "title": "Get information on included tree shape statistics",
      "topics": [
        "getAllTSS",
        "getTSScolors",
        "getTSSnames",
        "getTSSonly_bin",
        "getTSSsafe_n",
        "getTSSsimple",
        "getTSStype"
      ]
    },
    {
      "page": "poweRbal_data-plot",
      "title": "Plot method for poweRbal_data objects",
      "topics": [
        "plot.poweRbal_data"
      ]
    },
    {
      "page": "powerCompare",
      "title": "Comparison of the power of TSS under different models",
      "topics": [
        "powerComp",
        "powerComp_RegAcc"
      ]
    },
    {
      "page": "poweRbal_data-printsummary",
      "title": "Print and summary method for poweRbal_data objects",
      "topics": [
        "print.poweRbal_data",
        "summary.poweRbal_data"
      ]
    },
    {
      "page": "powerShow",
      "title": "Function for displaying TSS distributions",
      "topics": [
        "showTSSdata"
      ]
    },
    {
      "page": "tssInfo",
      "title": "Tree shape statistics",
      "topics": [
        "tssInfo"
      ]
    }
  ],
  "_rundeps": [
    "ape",
    "cachem",
    "cli",
    "clusterGeneration",
    "coda",
    "codetools",
    "combinat",
    "cpp11",
    "DEoptim",
    "digest",
    "doParallel",
    "expm",
    "farver",
    "fastmap",
    "fastmatch",
    "foreach",
    "generics",
    "glue",
    "gmp",
    "igraph",
    "iterators",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "maps",
    "MASS",
    "Matrix",
    "memoise",
    "mnormt",
    "nlme",
    "numDeriv",
    "optimParallel",
    "phangorn",
    "phytools",
    "pkgconfig",
    "quadprog",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "scales",
    "scatterplot3d",
    "treebalance",
    "vctrs",
    "viridisLite"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "powerbal",
  "_universes": [
    "sophiekersting"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-15T08:58:43.000Z",
      "distro": "noble",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "826580526280e70d2c8b5ad095489d4f2ea79777d0b9b2c07677f9c45239fdf1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-15T08:58:47.000Z",
      "distro": "noble",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "fed904b9e4d30290a055695432e610f30c348d952f94c86d70e26214a64e65ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-15T08:59:37.000Z",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "61bf8c7e3b879fdc879d535d9d15501b42d37849f1404246e9d59795d9e81134",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-15T08:58:11.000Z",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "5606a85dfb8459418c9cc12fe9640d0b4bfae8fe1615c7ab31e73d64be768e6d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-15T08:57:58.000Z",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "04ba1aafc965e0c9db62deaae3e66341fba0f7e9ee16cd6a4072cf6a8ef19250",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-15T08:57:33.000Z",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "8eb8c6e40ad8fd6832c5843fb4ca1cb48be597ee43437e6b154df75ee9f5df3e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-15T08:57:44.000Z",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "d72eccb27ff66c2561151dd995ad0618c5ea363a0a675cfd58a4d716bee3eb45",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-02T19:33:32.000Z",
      "commit": "6e844340a0aec3463853b37a90451ffb02609c86",
      "fileid": "fcec2644a4efae283af1514dcbcdb83be67c53e1d2b4dfeb7b2245535302a65a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sophiekersting/actions/runs/25909159182"
    }
  ]
}